YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.53
Transmembrane Helix	7	28	0.83
Cytoplasmic	29	56	0.51
Transmembrane Helix	57	77	0.82
Non-Cytoplasmic	78	83	0.51
Transmembrane Helix	84	102	0.72
Cytoplasmic	103	118	0.82
Transmembrane Helix	119	140	0.81
Non-Cytoplasmic	141	147	0.78
Transmembrane Helix	148	172	0.88
Cytoplasmic	173	189	0.86
Transmembrane Helix	190	208	0.94
Non-Cytoplasmic	209	216	0.84
Transmembrane Helix	217	238	0.93
Cytoplasmic	239	257	0.89
Transmembrane Helix	258	280	0.92
Non-Cytoplasmic	281	298	0.92
Transmembrane Helix	299	322	0.89
Cytoplasmic	323	332	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEANSLAVI FVSLMGFSIL LYAILDGYDL GVGILLPLTQ KDDSDTMIAS IGPFWDANET  60
   61 WLVLAIGLLL IAFPAAHSHI FKELYLPTAV LLISLVLRGV AFDFRAKAAF SHKPTWNKVF 120
  121 KVGSLLAAMS QGYMLGMYVM GFEDTLAAYV FSLLSAFGVA AAYAYIGACW LIMKTEGALQ 180
  181 VQAVNWAKRT GILCFIGVVA VSAVNPLINP DVYAKWFAWP TTLYILPLPI LCFALFVYSQ 240
  241 QQLKLLPAQN DKGCWRPFVA AVIIFALCFF GLAFSFFPYI VPGKLTIWQS AAAPESLSFI 300
  301 LWGAIIVVPV IISYTVFSYR VFWGKVQELR YH