YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146539, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILAMFKPN RDAKHYPGFG AVGVLFFTFL YFPILVIIAY SFNSNRIVSV WQGFSWQWYA  60
   61 SALQNEGLLN SLRVSLTVAL FATLIATVIA VSAALVLERG QNVKHAKLSQ GVVNLPLMLP 120
  121 EIVFAVAILI LFSQLGIQSG MLKLILAHSA FCIPFAFLPI RARLQGMDNN LEQAAQDLYA 180
  181 TPLVTFRRIT LPLIAPGIFA GSMLSFVISM DDFITSNIVS GGGATTLPVY IFSLVKQGVS 240
  241 PELNAISTLI MVASLLIATP CWLIAKRSR

Type	Start	End	Confidence
Cytoplasmic	1	17	0.91
Transmembrane Helix	18	41	0.90
Non-Cytoplasmic	42	75	0.89
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	111	0.88
Transmembrane Helix	112	133	0.89
Non-Cytoplasmic	134	143	0.62
Transmembrane Helix	144	162	0.88
Cytoplasmic	163	188	0.83
Transmembrane Helix	189	208	0.86
Non-Cytoplasmic	209	242	0.64
Transmembrane Helix	243	265	0.90
Cytoplasmic	266	269	0.74