YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280762, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHFDCVVIG GGMVGAASAL TLAQLGLKVA LVEKFTPQAF SAEQPLDLRV SAISLASQNL  60
   61 LNQVGAWQQV KQWRSCPYKR LGVWEYESAY TEFNADDIEQ SHLGHIVENR LIQLALWQQV 120
  121 TAMSNIHTYC PESLLSLNQD DDSGNNRATL TLTNSVVTAK LVIGADGAQS KVRQMSAIGM 180
  181 TGWDYQQSAM LINVETSMCQ QDITWQKFSP TGPVAFLPLP GQSPLGGYAS LVWYHQRDEI 240
  241 TRLASLSNSQ LQQEVLKCFP AQLGDIKVLA KGDFSLTRRH ANTYQHKRVL LLGDAAHTIN 300
  301 PMAGQGVNLG FKDVLALQHV IAEAIGNGEA WHDEAVLVRY EKMRRKDNLL MMSTMDALYA 360
  361 GFSHPSPLIK AARNLALLAV NKVPVLNSTI KNKALAYACG L

Type	Start	End	Confidence
Signal Peptide	1	23	0.49
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	401	0.95