YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146498, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIAGTGY VGLSNAMLLA QHNEVIAVDI IAEKIELLNS GKSPIEDTEI SDFLANRELN  60
   61 FTATLDKEAA YAGADYVIIA TPTDYDPETN YFNTASVESV IKDVMAINPS ACMVIKSTVP 120
  121 VGYTARIREE LGCEGLIFSP EFLREGKALH DNLYPSRVIV GEDSDRARKF AGLLTEGAWK 180
  181 ENIDVLFIRS TEAEAVKLFS NTYLAMRVSY FNELDTYAEV HDLDSRHIIE GVSLDPRIGN 240
  241 HYNNPSFGYG GYCLPKDTKQ LRANYKDVPN NIISAIVDAN STRKDFVADS IIARSPKVVG 300
  301 IYRLIMKAGS DNFRASSIQG IMKRIKAKGI DVVIYEPVME EDEFYHSKVI KSLSEFKAMS 360
  361 NVIVSNRMVD ELIDVVDKVY TRDLFGSD

Type	Start	End	Confidence
Signal Peptide	1	20	0.52
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	388	0.99