YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.85
Transmembrane Helix	13	32	0.89
Non-Cytoplasmic	33	40	0.72
Transmembrane Helix	41	58	0.96
Cytoplasmic	59	67	0.75
Transmembrane Helix	68	87	0.93
Non-Cytoplasmic	88	94	0.77
Transmembrane Helix	95	113	0.88
Cytoplasmic	114	120	0.80
Transmembrane Helix	121	139	0.96
Non-Cytoplasmic	140	177	0.94
Transmembrane Helix	178	194	0.87
Cytoplasmic	195	211	0.58
Transmembrane Helix	212	237	0.74
Non-Cytoplasmic	238	243	0.72
Transmembrane Helix	244	264	0.90
Cytoplasmic	265	275	0.81
Transmembrane Helix	276	297	0.89
Non-Cytoplasmic	298	317	0.91
Transmembrane Helix	318	340	0.91
Cytoplasmic	341	355	0.93
Transmembrane Helix	356	376	0.86
Non-Cytoplasmic	377	380	0.72
Transmembrane Helix	381	399	0.89
Cytoplasmic	400	411	0.81
Transmembrane Helix	412	432	0.86
Non-Cytoplasmic	433	436	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQFPEQEN TDSTFAFFFL VLYTASVLIR PHEMFLSSVE WITIKVFAII AFIATIAAQR  60
   61 PLKLYSQHWM LLGLIPLIVV SGFLNGSGMD GVEQARKLFI SAIIPLFLYS SCITSIKRQH 120
  121 ILMLICIVAA LFMVHNGHTQ QTGYLGYGWA LDTHSVGYLS LGEKRITYLG FFNDPNDLGM 180
  181 FLVMNIPFTL YFYTKGNFLT KVTMLAALTA LGYGIYLTGS RGTMLGVGAL LGIYWLVMSA 240
  241 GPKLFIAAAI LSPIAATVIT SLQSNIDSSI DGRLEAWYAG ILMLISNPIF GVGTGNFMEE 300
  301 HERVAHNSYI HIAGELGIPG YSLWGGALVF TALVGYLFII KTQSPEEYNT ECKNELALNK 360
  361 TLFFSMIGFM ITAFFLSRSF TLLLFIFMGM TIASHVRLIK LMPELSTIFS KANAIKSMGY 420
  421 CWVIIVAVYI SLKMGL