YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	36	0.85
Non-Cytoplasmic	37	67	0.62
Transmembrane Helix	68	87	0.86
Cytoplasmic	88	103	0.56
Transmembrane Helix	104	124	0.76
Non-Cytoplasmic	125	126	0.47
Transmembrane Helix	127	145	0.81
Cytoplasmic	146	152	0.77
Transmembrane Helix	153	176	0.88
Non-Cytoplasmic	177	190	0.73
Transmembrane Helix	191	213	0.89
Cytoplasmic	214	232	0.86
Transmembrane Helix	233	257	0.83
Non-Cytoplasmic	258	262	0.58
Transmembrane Helix	263	281	0.82
Cytoplasmic	282	295	0.80
Transmembrane Helix	296	314	0.94
Non-Cytoplasmic	315	331	0.77
Transmembrane Helix	332	352	0.92
Cytoplasmic	353	358	0.76
Transmembrane Helix	359	379	0.91
Non-Cytoplasmic	380	388	0.75
Transmembrane Helix	389	414	0.86
Cytoplasmic	415	429	0.82
Transmembrane Helix	430	449	0.92
Non-Cytoplasmic	450	462	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINEILVIS MFLTFIVFLF TGIPIAYVLA GVGILFGGIG YLSDLHLDTF TGLDLNVLGL  60
   61 SVSRIFSLME NWVLVALPMF IFMGLMLDKS GVAERMMMAM QELFGRVRGG LGITVTLIGI 120
  121 ILAASTGIIG ASVVLLGLLS IPAMMKQNYS KTFATGIVCS AGCLGILIPP SIMLVIMADQ 180
  181 LALSVGDLFT AAVFPGLMLG VVYLAYILGL SFFKPEVAPA PENRRPLTAK VLVEVFKAIL 240
  241 PTLVLIIAVL GSIFAGIATP TEASGVGALG ATILAALNKK LNFKVFHEVL MASYKTTAYI 300
  301 FAIFIGATIF SLVLRELGGD EFISSMLTGL PFGPYGVLFV ILVIVFLLGF LLDWIEITLI 360
  361 VLPLLAPVVS SLDFGIGAVN GLDQPVLVWF VMLIAVTLQT SFLTPPVGFA LFYLKGVCPP 420
  421 EIKLTDIYKG VIPFIILQLL GLGALIMYPE VALWLPSMVY GK