YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKPLSIFLG WRYVRGRHGN GFSAFISASS TIGIALGVTV LIVVLSAMNG FERELSEKLL  60
   61 SIVPHVELVS VNEPIKDWPK SIEKVEIESS VIAAAPVIKM TGMLQHGLKL KAVEVRGVDA 120
  121 KLEKQVSSID DYIIAGEWQA LMASELNENT IVIGSGVATK LSVELGDKIQ LLLPPPGGSN 180
  181 DVKQVFSAPI TRQVEVVGIF KFGGTVDETL AYIPLTLASE VMGYKENETQ SIRLKVTDVF 240
  241 SAPKIARQVA YNFDHYVYIN NWTRTQGHLF NDIQLVRMVM FIVLVLVIGV ASFNIVSTLI 300
  301 MAVNEKQGDI AILKTMGASS STIMLAFIAQ GLVNGVVGSL LGAMCGVYLA LNLTDIISTL 360
  361 EQLMGITFLS GDVYFINYLP SVLHASDVYI TIITALIMSL LATLYPAWRA TKIEPAQVLG 420
  421 QL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	45	0.91
Non-Cytoplasmic	46	277	0.63
Transmembrane Helix	278	302	0.87
Cytoplasmic	303	316	0.46
Transmembrane Helix	317	351	0.72
Non-Cytoplasmic	352	387	0.44
Transmembrane Helix	388	408	0.91
Cytoplasmic	409	422	0.84