YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280514, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVYLVSAK RTAIGSFGGA LKSVPAANLA AAAVKGALAE ANVNPDQLDE LIMGNVISAG  60
   61 QGMGPGRQAA IAAGAPETIP AYTVNMICGS GMKVVMDAAS RIKAGDADLV MACGGENMSR 120
  121 FPYIVTSDIR FGSKMGNLEL SDSLITDGLT DVFNNYHMGI TAENIAEQVG VSREEQDAFA 180
  181 LESQRRAVSA IEAGKFSDEI VPVEVMVRRK TAVVDTDEYP RQDASQESLA KMRAAFKKDG 240
  241 TVTAGNSSGV NDGGAAILVA SQGAVDQHQL KPVAELVSYA QVGVDPTVMG LGPVPAIKEA 300
  301 LAKANLKFSD IELLELNEAF AAQALGVMKQ LCVEHDEDLD NLKQRTNVNG GAIALGHPLG 360
  361 ASGNRIIVTL LHEMRKRGNK LGLASLCIGG GMGTAVIVRL LD

Type	Start	End	Confidence
Signal Peptide	1	31	0.72
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	350	0.89
Transmembrane Helix	351	368	0.51
Cytoplasmic	369	380	0.51
Transmembrane Helix	381	401	0.72
Non-Cytoplasmic	402	402	0.83