YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280463, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFKRFFAVF KARNIEFFRD KSSLGWNLFF PILLLVGFSF IFSGDGRPAY KIGLLVDQGQ  60
   61 LQHENAAQTS LTELRFIDFI NYKDLALAKA KLSRHSLDLL VDYDAKRYWV NEESSKSYLV 120
  121 EKIFLGQQSG FTRLQSSGKN IRYVDWVLPG ILGMNMMFSC LFGVGYVIVR YRKNSVLKRL 180
  181 KATPLSAFEF VSAQLLSRLF IVMFMSTVVY SGCNIFFDFF MLGSYVDLFI IGALGAFCLI 240
  241 SLGLLVASRS KSEELIGGLL NVTSWPMIML SGVWFSLEGA PEGLKILADF MPLTHLVAGA 300
  301 RAVITEGATL SDISFHVNIL LLMSSVFLAL GAYLFSWNTE R

Type	Start	End	Confidence
Cytoplasmic	1	22	0.95
Transmembrane Helix	23	43	0.93
Non-Cytoplasmic	44	146	0.99
Transmembrane Helix	147	169	0.91
Cytoplasmic	170	194	0.84
Transmembrane Helix	195	217	0.78
Non-Cytoplasmic	218	227	0.69
Transmembrane Helix	228	247	0.96
Cytoplasmic	248	254	0.92
Transmembrane Helix	255	277	0.89
Non-Cytoplasmic	278	314	0.60
Transmembrane Helix	315	337	0.91
Cytoplasmic	338	341	0.49