YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280446, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.96
Transmembrane Helix	12	33	0.92
Non-Cytoplasmic	34	42	0.76
Transmembrane Helix	43	62	0.91
Cytoplasmic	63	73	0.83
Transmembrane Helix	74	97	0.89
Non-Cytoplasmic	98	115	0.85
Transmembrane Helix	116	137	0.90
Cytoplasmic	138	197	0.47
Transmembrane Helix	198	219	0.90
Non-Cytoplasmic	220	236	0.48
Transmembrane Helix	237	259	0.71
Cytoplasmic	260	263	0.48
Transmembrane Helix	264	282	0.93
Non-Cytoplasmic	283	333	0.67
Transmembrane Helix	334	354	0.89
Cytoplasmic	355	369	0.77
Transmembrane Helix	370	389	0.83
Non-Cytoplasmic	390	452	0.78
Transmembrane Helix	453	475	0.82
Cytoplasmic	476	492	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELNLPKQP SMLDASIPVI TLICLLTLAV FYFGDNSSYG PNQIALLISM GVAIIVGVKN  60
   61 GHNWHSIEKA IVNGISLSLG AVLILLAVGS LIGTWLLSGT VPTMIYYGLQ LLNPSWFYAA 120
  121 ACVMCAIVSM SIGSSWTTAA TIGVALIGIA QGLDLSPAVT AGAVISGAYF GDKISPLSET 180
  181 TNLAPAIAGS ELFAHIRYMF WTTAPSIVTA LVLFIIIGLN ETITVNNDSI DLLSQQLAEQ 240
  241 FNISVFNLVP LLVLLTLAIK KVPAFPAVAI GALIGGVWAL VFQQELIVRL GGNTDLITAN 300
  301 VKVIWTAFFD GVVIETGNSQ LDSLLSGGGM SSMLNTVWLI MCALSFGAVL EHLGMLKKFV 360
  361 EVILASAKST GSLIASTVAT CIGTNILTAD QYMAIVMPGR MYKEEYERRG LDPLVLSRTL 420
  421 EDAGTITSPL IPWNTCAVYM SGVLLVNPLD YMFYCFFNWI NPILAVIYGF IGFNIKTLTN 480
  481 KTTKETTHKA TA