YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDTRFKWL PAPILSILLF LVWLLLNNSV SAGHIVLAVI LAIVIPLATS PFRTKQPLII  60
   61 KPGLAIRHLL LVLYDIVTAN VQVAILILGP TKKLTPGFIK VPLDLTHSMP ITILASTVSL 120
  121 TPGTVSAEVL PWTETFIEGQ DSEQRFLLIH VLDLKDEQAL INTIKQRYEA PLMEIFQC

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	26	0.85
Non-Cytoplasmic	27	31	0.76
Transmembrane Helix	32	52	0.84
Cytoplasmic	53	68	0.78
Transmembrane Helix	69	89	0.74
Non-Cytoplasmic	90	110	0.77
Transmembrane Helix	111	127	0.44
Cytoplasmic	128	178	0.54