YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280372, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.74
Transmembrane Helix	13	37	0.78
Non-Cytoplasmic	38	45	0.78
Transmembrane Helix	46	66	0.90
Cytoplasmic	67	76	0.83
Transmembrane Helix	77	98	0.88
Non-Cytoplasmic	99	108	0.82
Transmembrane Helix	109	131	0.91
Cytoplasmic	132	141	0.93
Transmembrane Helix	142	163	0.89
Non-Cytoplasmic	164	166	0.78
Transmembrane Helix	167	185	0.80
Cytoplasmic	186	191	0.69
Transmembrane Helix	192	213	0.78
Non-Cytoplasmic	214	217	0.70
Transmembrane Helix	218	237	0.82
Cytoplasmic	238	246	0.78
Transmembrane Helix	247	265	0.92
Non-Cytoplasmic	266	271	0.70
Transmembrane Helix	272	294	0.88
Cytoplasmic	295	301	0.85
Transmembrane Helix	302	323	0.90
Non-Cytoplasmic	324	331	0.77
Transmembrane Helix	332	354	0.90
Cytoplasmic	355	524	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFIWILFAF ICGLAAKTIS LPPSIGFLAA GFILNIAGYQ ADESLSVLSD LGITIMLFTI  60
   61 GLKLNVKNLF KTEVWLGCSL HTLLWIVVTI TFVKLLALMS VNYFSDLDLM TAALIAFALS 120
  121 FSSTVCVIKL LEENGEMRTR HGKLAISILV IQDIIAVAFL VFATGKIPSV WAFSLLGLFL 180
  181 IKPLINRVIN HVGHGELITL MGFFLALGSY ELFELVNIKG DLGALLVGMF LASHIKATEI 240
  241 NKALMNFKDI FLIGFFLSIG FTAIPTLEML GLATLLILLV PIKFLMFYGI FTLLKIRCRT 300
  301 AFLSALSLSN FSEFGLIVGA LSVSSGWLSN DWLVILALSM AISFILTNII YRFAHTIFTE 360
  361 HRGFLSRFER QTKLEEDNFS QPCQRPIVII GMGRVGMGAY QAINSHGTSP AWGLDADKEK 420
  421 ITWLNSKGMQ AYYGDAEDIY FWESIDLSQL ELVLLALPSV QDIINITKQL TAANYKGKIA 480
  481 AVARYDDERK QLEAFGIDKV FNFYTEAGVG FAEESLALLP KNMR