YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280339, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLWGIFRKT PVAMIGFCCF IFLILLAMFA PILAPYTPVD GNLDMILLPP AWHSDGNVSY  60
   61 LLGTDELGRD MLSRLMYGTS LTFGLSFIVV IFSLVIGVVI GSLSALTRGI KSSFLNHFLD 120
  121 VVLSIPSLLL AIIIVAILGP GISNTVWAIA IVFIPQFIHI TRYAVKEEFR KDYVLASRLD 180
  181 GASNFRILYY SVFPNIVERL MSQATLAQSA AILDIATLGF LGLGAQIPLP EWGAILANGL 240
  241 ERFYIAPWTV YLPGLAILFA VVATNLVGEG IRHALKVRKE N

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	34	0.92
Non-Cytoplasmic	35	80	0.96
Transmembrane Helix	81	106	0.86
Cytoplasmic	107	116	0.83
Transmembrane Helix	117	138	0.93
Non-Cytoplasmic	139	144	0.77
Transmembrane Helix	145	163	0.92
Cytoplasmic	164	205	0.95
Transmembrane Helix	206	229	0.84
Non-Cytoplasmic	230	247	0.87
Transmembrane Helix	248	268	0.93
Cytoplasmic	269	281	0.91