YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146030, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.54
Transmembrane Helix	6	25	0.74
Cytoplasmic	26	28	0.63
Transmembrane Helix	29	49	0.75
Non-Cytoplasmic	50	55	0.56
Transmembrane Helix	56	75	0.86
Cytoplasmic	76	94	0.75
Transmembrane Helix	95	116	0.84
Non-Cytoplasmic	117	133	0.64
Transmembrane Helix	134	155	0.87
Cytoplasmic	156	166	0.60
Transmembrane Helix	167	189	0.92
Non-Cytoplasmic	190	387	0.73
Transmembrane Helix	388	417	0.81
Cytoplasmic	418	433	0.75
Transmembrane Helix	434	457	0.87
Non-Cytoplasmic	458	463	0.78
Transmembrane Helix	464	498	0.72
Cytoplasmic	499	499	0.31
Transmembrane Helix	500	533	0.72
Non-Cytoplasmic	534	549	0.46
Transmembrane Helix	550	573	0.88
Cytoplasmic	574	575	0.40

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIEQWLMIG VFVATFISLV KYSHVPERVF SVTILLCLAL SFVSVDDILT NAVNPGLVTL  60
   61 VLLVLCSFAF ERTSILRRLS AGVFNGSKVK STLRLLLGTA LASALMSNTA VVATLINTVK 120
  121 KNKLINPGKL LLPLSFAAIL GGTLTLVGTS TNLIVNSLLI KQGHDGFGFF DFTLIGLSAF 180
  181 VLCLFVILVR SRTLPDLDDD DLATNEYLLE AEVATASTLI GKSIEENGLR NLNSLFLVEI 240
  241 VRQGRLISPV CPEECLQAQD KLIFSGDISK VLTLQQFDGL NLYAEQDDLL RDNLTEVLVK 300
  301 ADSTIAGKTL KKAGFRARFD AAVVAVRREG GALSGKLGDI VLQPGDFLVL AVGQDFATRP 360
  361 NLSKNFYILS GHQAENMLNG WRDYTTVWGF IASILVSVFT PLPLLSCLFI YLAFLIFSDS 420
  421 LSVNEIKRRF PLEIWMIVLG ALTLASAIEN TGIAVMLAQN IEGFLHGQSI YIAFVSIFLL 480
  481 TLIMTELITN SAAAALAFPI AYNIALGLGV DPTPFVMAVA FAASGSFISP YGYQTNVMVY 540
  541 NAGNYQLKDF VRFGLPISLI YSATVILVIP IVYPF