YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145959, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.59
Transmembrane Helix	58	83	0.76
Non-Cytoplasmic	84	110	0.89
Transmembrane Helix	111	133	0.80
Cytoplasmic	134	148	0.86
Transmembrane Helix	149	172	0.87
Non-Cytoplasmic	173	187	0.88
Transmembrane Helix	188	211	0.90
Cytoplasmic	212	278	0.97
Transmembrane Helix	279	298	0.94
Non-Cytoplasmic	299	310	0.87
Transmembrane Helix	311	329	0.94
Cytoplasmic	330	344	0.83
Transmembrane Helix	345	366	0.87
Non-Cytoplasmic	367	381	0.74
Transmembrane Helix	382	404	0.81
Cytoplasmic	405	409	0.54
Transmembrane Helix	410	437	0.75
Non-Cytoplasmic	438	471	0.78
Transmembrane Helix	472	492	0.91
Cytoplasmic	493	493	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWLSVLPPL VAIIIVIWKK EVILALLTAV FTSELLLASQ EHSNVIFHAF IGSLERVIGV  60
   61 VSSAGNARIL IFSLLIGALL AYVRDSGGVT ATVEKLVNKG IAKSKRQVGA LTMFTGMVIF 120
  121 IESNLSVLTA GILSRDLFDK FKMSRARLAY IIDSTSAPVC ILVLLNGWGA YVLALLNNYE 180
  181 LGQSSVSILW GSVAFNFYAI IALLMVVYTV VTDRVHGPMK TAELALNTSE KTKERVESDD 240
  241 LSQRSSIAES SIVQTAAPQE TLSQAILHEA MVPATKARFM LVPLMSMIFG MFFFMYWSGN 300
  301 GDITQGDGSK SVLYATCLGL AVSYFLLRFS NRFGHQELVE IGFKGIGELL PLVTIVLLSL 360
  361 TLGASLKELG TGYFIAGIVG EYLPLILVVP MLFIAGAIIS FSTGTSWGTF AILIPIGVPL 420
  421 IQALGLPPSL VIAAILGGGI FGDHCSPISD TTCVSAIASG CDLLEHVKTQ MPYALFGGAL 480
  481 TLVAYIIASI VMI