YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280130, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.72
Transmembrane Helix	16	35	0.93
Cytoplasmic	36	41	0.70
Transmembrane Helix	42	62	0.86
Non-Cytoplasmic	63	77	0.50
Transmembrane Helix	78	98	0.85
Cytoplasmic	99	104	0.67
Transmembrane Helix	105	128	0.87
Non-Cytoplasmic	129	137	0.67
Transmembrane Helix	138	156	0.59
Cytoplasmic	157	162	0.39
Transmembrane Helix	163	183	0.80
Non-Cytoplasmic	184	210	0.45
Transmembrane Helix	211	238	0.76
Cytoplasmic	239	257	0.40
Transmembrane Helix	258	276	0.52
Non-Cytoplasmic	277	284	0.72
Transmembrane Helix	285	306	0.92
Cytoplasmic	307	316	0.79
Transmembrane Helix	317	336	0.85
Non-Cytoplasmic	337	352	0.75
Transmembrane Helix	353	375	0.91
Cytoplasmic	376	377	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLNTLWLS TGLANFELGQ VVMMLVGCGL LYLAIARNFE PLLLLPMGFG AILTNIPVAG  60
   61 FSEVGGLLHY IYYAGVDTGI FPLIIFMGVG AMTDFGALIA NPKTLFLGAA AQFGIFATLF 120
  121 GAIALNYIPG IEFTLKDASA IAIIGGADGP TAIFLASKLA PELLGAIAVA AYSYMALVPI 180
  181 IQPPIMKALT TEEERKIEMK QLRPVTKIEK IVFPIGVLAM TIFFLPSATP LVGMFCLGNL 240
  241 MRESGVVDRL SSTAQNELIN ITTIFLGLGV GSKLSADAFL NVETLGILAL GAVAFSIGTA 300
  301 SGVIMAKTMN KFSKDPINPL IGAAGVSAVP MAARVANKVG LQANPHNFLL MHAMGPNVAG 360
  361 VLGSAVAAGI LLALVGG