YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSDLQALV TTLEMAALTT FILLIIGTPL AWYLAKMTSR FKVIIEAVVA LPLVLPPTVL  60
   61 GFYLLIAFSP EYLPGQLWQQ ATGQQLAFSF SAIVIGSVLY SLPFVVQPLQ KAFEQLGDSL 120
  121 LEAGALLGAG PIDRFFSIVL PLTKASFITA ASLGFAHTVG EFGVILMIGG NIPGETRVLS 180
  181 IALFDHVEAF DYARAHLLAI SLLIGSMVLL AAIYWLNLPT RNNTKNLSQV RSVK

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.83
Transmembrane Helix	15	35	0.92
Cytoplasmic	36	43	0.87
Transmembrane Helix	44	67	0.90
Non-Cytoplasmic	68	85	0.85
Transmembrane Helix	86	106	0.92
Cytoplasmic	107	144	0.78
Transmembrane Helix	145	169	0.71
Non-Cytoplasmic	170	194	0.77
Transmembrane Helix	195	218	0.90
Cytoplasmic	219	234	0.83