YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280056, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSIALKSI LTKEIQRFTR IWVQTLVPPA ITISLYFVIF GSLIGSRIGE MGGFDYMSFI  60
   61 VPGLIMMSVI TNSYSNVASS FFSAKWQRNV EEMLVAPVPN WVIVAGYVGG GMCRGILVGL 120
  121 IVTIVSLLFV DIQLHNIWVI IATVTLTSAT FALGGLINAI FAGSFDDISI IPTFILTPLT 180
  181 YLGGVFYSIS LLPEFWQGVS QINPIVYMVN AFRYGFLGIS DVSLVTAFAV IGFFIVTLFT 240
  241 IAMVLISKGI GLRS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.90
Non-Cytoplasmic	45	58	0.82
Transmembrane Helix	59	78	0.91
Cytoplasmic	79	102	0.78
Transmembrane Helix	103	129	0.81
Non-Cytoplasmic	130	136	0.80
Transmembrane Helix	137	161	0.90
Cytoplasmic	162	169	0.80
Transmembrane Helix	170	191	0.90
Non-Cytoplasmic	192	223	0.85
Transmembrane Helix	224	246	0.92
Cytoplasmic	247	254	0.84