YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280051, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.71
Transmembrane Helix	16	35	0.70
Non-Cytoplasmic	36	40	0.45
Transmembrane Helix	41	60	0.81
Cytoplasmic	61	69	0.52
Transmembrane Helix	70	89	0.75
Non-Cytoplasmic	90	90	0.46
Transmembrane Helix	91	112	0.81
Cytoplasmic	113	119	0.72
Transmembrane Helix	120	141	0.85
Non-Cytoplasmic	142	170	0.73
Transmembrane Helix	171	189	0.72
Cytoplasmic	190	194	0.53
Transmembrane Helix	195	214	0.88
Non-Cytoplasmic	215	219	0.58
Transmembrane Helix	220	236	0.72
Cytoplasmic	237	242	0.49
Transmembrane Helix	243	260	0.75
Non-Cytoplasmic	261	261	0.34
Transmembrane Helix	262	285	0.66
Cytoplasmic	286	290	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYPAENFTK RFLSSLAQVM LQSNTVTGFL FLVGIGLNSP TMLLGCILAI LSSLAVAKLF  60
   61 QYDSNCVTKG FYGFNAALVG IAVFSLLPLS FISLVLVLLG GAFSALLMHV MITKIPSIPA 120
  121 LTTPFILSTW TIVLIIDSVG LADPMSGSFT GSISPTLIDS LHGVLRGVGQ VMLQDSWLSG 180
  181 AVFCCALLFS SYKTAVWAIL GSLIGLLVAT TFGFSQEKAM MGLYGFNGCL VAIALVDRYP 240
  241 NKYWLIILAI LFSVLFTRVF EMIAIPAFTA PFVMTTWLMI GIVKLKADFD