YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280014, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVISIVSV LALSSFTHQA VASSELCLVS NNDCTFVLIS EKKSEVMTQV VSETTSEDVN  60
   61 THHSAKVTQG SSYTEENEML SVVNEERSKQ RLSPFSTFKI TNSLIALDSK QIASAQQVLT 120
  121 FDKEKYPVKV WWPSVWKLPE YDLTTAFKFS MVPIFRQLAT DIGQDKMQSY VTKFNYGNHD 180
  181 ISSGLDDFWL NGSMKISALE QVRFLQKMHR GQLGVSQHSI DTLKEVMLVE KNANYLLYAK 240
  241 TGAGKANSND KSSKAMLGWY VGFVENDKGV HYFAFNFTRG SYAEMKAVRV KIARNHLKKA 300
  301 GVI

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	303	0.99