YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279940, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.48
Transmembrane Helix	8	37	0.81
Cytoplasmic	38	44	0.45
Transmembrane Helix	45	71	0.75
Non-Cytoplasmic	72	94	0.50
Transmembrane Helix	95	118	0.73
Cytoplasmic	119	136	0.71
Transmembrane Helix	137	161	0.82
Non-Cytoplasmic	162	171	0.70
Transmembrane Helix	172	194	0.93
Cytoplasmic	195	214	0.78
Transmembrane Helix	215	236	0.78
Non-Cytoplasmic	237	243	0.58
Transmembrane Helix	244	260	0.83
Cytoplasmic	261	271	0.72
Transmembrane Helix	272	294	0.88
Non-Cytoplasmic	295	317	0.82
Transmembrane Helix	318	343	0.83
Cytoplasmic	344	345	0.50
Transmembrane Helix	346	375	0.69
Non-Cytoplasmic	376	398	0.58
Transmembrane Helix	399	423	0.82
Cytoplasmic	424	431	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVITFTLVF VMIVLLFLSF PMVVPLSVGA LIGLVHFSSI DTGVIIQQMV TGISPNALIA  60
   61 VPMFILAADI MTRGHTAHNL LGLIESFVGH LRGGLPITAC ISCTLFGSVS GSTQATVVSV 120
  121 GQIMRPKLLQ AGYKDSFVMA LIINASDIAF LIPPSIGLIL YGTLANTSVG ELFIAGIGPG 180
  181 VLLAVMFSAY CYFYTVYQGD SITLVKKSTM AEKLVAIKKS LLPLGFPTLI VGGIYSGAVT 240
  241 PTEAASFSVL YAIILECFIY RELKYKDVID AALSTGLITA VVFILVGMGQ AFSWYISFEQ 300
  301 IPMELLAPLD LEGASKEYVL FVIALSFFVG CMFVDSLVVL VILTPIFVPI VTAVGLDPVL 360
  361 VGVMITLQMA VGSATPPFGC DIFTAIAIFN KPYLEVIRGT LPFILILFMM SALLIYFPEI 420
  421 ALFLRDQAFA K