YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145616, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.91
Transmembrane Helix	18	37	0.93
Cytoplasmic	38	55	0.83
Transmembrane Helix	56	77	0.90
Non-Cytoplasmic	78	97	0.87
Transmembrane Helix	98	120	0.91
Cytoplasmic	121	128	0.92
Transmembrane Helix	129	149	0.94
Non-Cytoplasmic	150	186	0.94
Transmembrane Helix	187	210	0.90
Cytoplasmic	211	220	0.82
Transmembrane Helix	221	240	0.94
Non-Cytoplasmic	241	389	0.99
Transmembrane Helix	390	412	0.92
Cytoplasmic	413	422	0.90
Transmembrane Helix	423	446	0.85
Non-Cytoplasmic	447	467	0.94
Transmembrane Helix	468	490	0.86
Cytoplasmic	491	528	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISEALVELS RWQFAVTALF HFLFVPLTIG LTWILFIMEA VYVMTGREIY RDMTKFWGKL  60
   61 FGINFAIGVA TGLTMEFEFG TNWSYYSHYV GDVFGAPLAI EGLMAFFLES TFVGMFFLGW 120
  121 DRLSKRQHLM GTFLMALGTN FSALWILIAN GWMQNPVGSE FNYMTMRMEL VSFSEIIFNP 180
  181 VAQVKFIHTV AGGYVAGSMF VLSISSYYLL KGRDIAFAKR SFSVAAGFGL AAIFSVILLG 240
  241 DESGYEVGEV QRVKLAAIEA EYHTEPAPAA FTLIGIPDDE AMETHYAVKI PYALGLIATR 300
  301 SLDEKVTGLR DLQKAHEPRI RNGMIAYKYL VKLRNGEDTP ENLAKFNETK HDLGYGLLLK 360
  361 RYTDKVVDAT EAQIQMAVKD STPPVAPVFW AFRMMVASGF IMLLLFCLAF YFNARRQIEQ 420
  421 KRWLLKSILY ALPLPWIAIE TGWFVAEFGR QPWAISEILP TFLSTSSLAA SDVLFSLIAF 480
  481 IVVYSILFVI EMYLMIKFAR LGPSALHTGR YHFEQAPELT SGLRSQNS