YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279810, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKAQSSQM TENLVGIIDE TLIDNALIEN TVIVNTALES TAQSSQPLSY RHAFMLVLKR  60
   61 DLTIAMRHKD DIINPLLFFV IVVTLFPLGI GPEAQTLSRI APGIIWVAAL LATLLSLDRL 120
  121 FKSDHLDGSL EQMLLSPHPI FVLVLAKIFA HWLITGLPLL LIAPLLAVLL HLDEHSYTAL 180
  181 LLTLLLGTPV LSLLGAVGVA LTVGIKKGGV LLSLLVLPLY IPVLIFATSA IDTAALGLPY 240
  241 SGQLAIIAAL FFGSLTLAPF AVGAALKVST N

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	91	0.94
Non-Cytoplasmic	92	99	0.74
Transmembrane Helix	100	121	0.87
Cytoplasmic	122	147	0.84
Transmembrane Helix	148	170	0.83
Non-Cytoplasmic	171	178	0.83
Transmembrane Helix	179	201	0.92
Cytoplasmic	202	209	0.75
Transmembrane Helix	210	231	0.89
Non-Cytoplasmic	232	243	0.73
Transmembrane Helix	244	266	0.91
Cytoplasmic	267	271	0.85