YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145548, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKIKFSGK YSTNKVFAFF TGALFSTAIV LIPAAHAITI IPDAPQINAK GFILIDYTTG  60
   61 KIIAEENADT QLAPASLTKI MTSYIIGKEL ENGNIKNTDK VMISEKAWAK KFPDSSKMFI 120
  121 EVGTEVPVSL LNQGIIVASG NDACVAMAEH IAGSESAFAD LMNAHAEQLG MSSSFFENSH 180
  181 GLDSTSHMTT PRDMATLAIA LIREVPEEYA IYKQKSFTYN NIKQYNRNGL LWDKSLNVDG 240
  241 MKTGHTSNAG YSLVTSATKG DMRLVTVVMG TASERARKVE SKKLLNYGFR FFETITPYKA 300
  301 GEKFIANRVW MGDKENVDLG IISDTPITIP RGQRKNLKAN FELNQQLTAP LAKGTVVGTL 360
  361 FLQLDDEDIA QYPLVTLEEV NEGSLFSRLV DYVKLQFAN

Type	Start	End	Confidence
Signal Peptide	1	37	0.94
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	399	0.99