YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ISPE_COLP3
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCASNSNSF LNKAIEFPSP AKINLFLHIV GQREDGYHNL ETLFQFIDHS DTLTLTATET  60
   61 PDIELLTPID GVNNDDNLIV KAARLLKNRS NTDLGVKISI NKILPMGGGL GGGSSNAATV 120
  121 LVALNLLWQC EFSLSELSSL GLSLGADVPI FIHGFSAFAQ GVGDHLTAIK PQESWYLITK 180
  181 PECSISTKEI FTAVDLPRNT KKLDPTALNT SDFVTESFHN DCQTLVIKQY PEVAKLLAWL 240
  241 VEYAPSRMTG TGACVFTQFS SYQEARSLQA KLPKGISSFV AQGLNKSPLC SVIAKLSLSE 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	105	0.57
Transmembrane Helix	106	128	0.53
Non-Cytoplasmic	129	300	0.78