YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279724, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	23	0.85
Cytoplasmic	24	28	0.67
Transmembrane Helix	29	49	0.91
Non-Cytoplasmic	50	58	0.71
Transmembrane Helix	59	78	0.93
Cytoplasmic	79	87	0.70
Transmembrane Helix	88	111	0.90
Non-Cytoplasmic	112	117	0.70
Transmembrane Helix	118	138	0.86
Cytoplasmic	139	157	0.75
Transmembrane Helix	158	177	0.91
Non-Cytoplasmic	178	185	0.66
Transmembrane Helix	186	210	0.84
Cytoplasmic	211	216	0.58
Transmembrane Helix	217	235	0.74
Non-Cytoplasmic	236	239	0.62
Transmembrane Helix	240	257	0.92
Cytoplasmic	258	273	0.86
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	302	0.74
Transmembrane Helix	303	326	0.89
Cytoplasmic	327	341	0.89
Transmembrane Helix	342	363	0.87
Non-Cytoplasmic	364	370	0.69
Transmembrane Helix	371	394	0.85
Cytoplasmic	395	399	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSITLLIL AVGVFAIILA RFIRIPYTLL LVVLGFFLSL FTVAFGIDTG VRASNFQDLM  60
   61 LFILLPVLIF EAAFALNSKL LFKYLPNVLT LATLGLIIST LVIAVFLYFG IAHSGFPFIA 120
  121 ALLTGVVISA TDPVAVVGQL KALKAPDDLN VLIEGESLFN DATAIVLFSI ILSIALGQSE 180
  181 PDLTSAIITF SKVFFGGIIV GSVFGYIAAL LVKIIDTSVP HMVVITLFLA YGTFYIAEHL 240
  241 FHVSGIVAVM FAALLFKKSA QDQLKDVHTG LHNIWESLGF IANIFVFVLL GLVVSLNMFT 300
  301 QMWLAIILAI VGAFIARVIA VYCSVWLNQV IVGQPINRKY PPIMIWGGLR GAVTIALVLS 360
  361 LPTELPYWWT IQSIGFGIVL FTLIVQATTT PLLVKKLNI