YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145449, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEISIFHL FLEASILVQF VMLVLLTFSI VCWAMIFQRR KILRTAAAEL KAFEDKFWSG  60
   61 ADLSKLYSET SAKSQIQGIE SLFIAGFKEF ARLRKSHIDN PQIIVDGTHR AMRVALSREV 120
  121 DSLETHLPFM ATVGSISPYI GLFGTVWGIM NSFIALGAVK QATLAMVAPG IAEALIATAM 180
  181 GLFAAIPAVI AFNRFSHKVE KLENSYGNFM DEFSSILQRQ SAAEQSTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.95
Cytoplasmic	38	135	0.95
Transmembrane Helix	136	156	0.78
Non-Cytoplasmic	157	170	0.74
Transmembrane Helix	171	192	0.90
Cytoplasmic	193	228	0.96