YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279655, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	25	0.90
Non-Cytoplasmic	26	31	0.76
Transmembrane Helix	32	51	0.95
Cytoplasmic	52	71	0.94
Transmembrane Helix	72	93	0.94
Non-Cytoplasmic	94	101	0.73
Transmembrane Helix	102	122	0.86
Cytoplasmic	123	160	0.92
Transmembrane Helix	161	182	0.93
Non-Cytoplasmic	183	189	0.90
Transmembrane Helix	190	209	0.90
Cytoplasmic	210	218	0.76
Transmembrane Helix	219	238	0.90
Non-Cytoplasmic	239	244	0.85
Transmembrane Helix	245	265	0.91
Cytoplasmic	266	272	0.87
Transmembrane Helix	273	293	0.92
Non-Cytoplasmic	294	310	0.90
Transmembrane Helix	311	331	0.93
Cytoplasmic	332	345	0.96
Transmembrane Helix	346	367	0.92
Non-Cytoplasmic	368	656	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYRKEIDGL RAIAVMPVIF FHAGFSSFSG GYIGVDIFFV ISGYLITSIL LKEMENDKFS  60
   61 LLSFYERRAR RILPALSAVL IVTSIAAFCL MPAELLKSYS QSVVAVVTFS SNIFFYLTNG 120
  121 YFSTASDEKP LLHTWSLAVE EQYYLFFPIL MSALWSKGKK YLYSLLFIMT VISLFFAQYL 180
  181 AMNNHIDANF YLIFSRAWEL FIGSLIAFGK PISVADKRIR NELGGIVGLL LIIYSILTFD 240
  241 NETPFPSFYT LIPVLGTGFI IRFAHAETYI GRLLCNNLFV SIGLISYSLY LWHQPIFAFL 300
  301 RLKTIGEPLN IWFYMAIILT FFLAITSYRY IEKPFRNKSA YSKKAIFKLS GISLSLFLLI 360
  361 GVLGHVGNGF KGRFPENKFT DSIKFSPKRE ACHTQGDSFL KPSAACRYFE KDVKWASFGD 420
  421 SHIVEPTYAL AKQLEENNLG ILHLSFSGCP PALLFDVNVK GCSEWIKQSL DYLENDKTIT 480
  481 NVLLGFRYSE FLFGGQQHNY PELPNISPKN RIKVTQKSQS TAELRDIYWD SLDAIVQRLL 540
  541 RAGKTVHIMY PIPEMPLHVN KAISPFSIFS DESMLDLEQS VSKSYYMRRN EFIINKLNSL 600
  601 VYGDKLYRIK PFERLCGESY CSIIHKGSAL YFDDNHLSLT GAELLMRDIA KNHRKS