YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145392, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWLHPYAN PEVSYHFTNK LLPWLSALAA IFLGIGLVWA LLFAPADYQQ GHSFRIFYIH  60
   61 VPAASLSMGI YFAMAVAAFS SLVWQLKLAD ASAAAMAPVG ASFTAIALIT GAAWGKPMWG 120
  121 TWWIWDARLT SELILLFLYL GVIALHNAFE DKNLAGKAAG ILTLVGVINI PIIKYSVDWW 180
  181 NTLHQGSTVS KLGKPSMSLD MLWPFIFCFI GFSLLVGVII CLRFRNEILA RNSIRPWVRE 240
  241 LVENNSSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	43	0.96
Non-Cytoplasmic	44	60	0.85
Transmembrane Helix	61	84	0.87
Cytoplasmic	85	92	0.82
Transmembrane Helix	93	114	0.92
Non-Cytoplasmic	115	126	0.80
Transmembrane Helix	127	149	0.83
Cytoplasmic	150	153	0.94
Transmembrane Helix	154	175	0.87
Non-Cytoplasmic	176	201	0.93
Transmembrane Helix	202	224	0.92
Cytoplasmic	225	248	0.98