YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279625, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	34	0.84
Non-Cytoplasmic	35	43	0.79
Transmembrane Helix	44	67	0.87
Cytoplasmic	68	87	0.96
Transmembrane Helix	88	110	0.94
Non-Cytoplasmic	111	117	0.85
Transmembrane Helix	118	138	0.92
Cytoplasmic	139	146	0.87
Transmembrane Helix	147	166	0.96
Non-Cytoplasmic	167	173	0.84
Transmembrane Helix	174	196	0.90
Cytoplasmic	197	219	0.82
Transmembrane Helix	220	243	0.64
Non-Cytoplasmic	244	255	0.58
Transmembrane Helix	256	275	0.90
Cytoplasmic	276	287	0.84
Transmembrane Helix	288	309	0.92
Non-Cytoplasmic	310	320	0.88
Transmembrane Helix	321	344	0.89
Cytoplasmic	345	350	0.93
Transmembrane Helix	351	371	0.92
Non-Cytoplasmic	372	377	0.72
Transmembrane Helix	378	398	0.94
Cytoplasmic	399	406	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDIKRLVD NFCSLAVLKI FNLLLPLVTL PYLLKTLELN NYGVIVLALS LIMYFQTITE  60
   61 YGFNLSATRE IAKNRSSAAR LEFIYSKVVW CKLLLLIISL LVLVVVVFFT PKLFESKTTF 120
  121 LLTGLILIGH SMFPEWFFRG MEQMRYITLL DLCIKLLFTI GVFVFINNEG DGWLYPLLLG 180
  181 SAYITVSILS HLLIYYKFNV SLKLVKFMVI YRTLKNTFPL FINQFFPNLY NNTTTFLVGM 240
  241 MLGNHAVGLF GAIKQVASLL NVFNSVITAV IFPYLNRNKD KFNLYCKYYL LLLFTVSLLF 300
  301 IFVGQYVFLL LEINDEIVNK VFLILIIGIF NIGIYSVFAT NYLIIHKKDK LVMKITVITS 360
  361 LIGFSLSYPF IHLFGLTGAA LTVCTSQFLL GTISFVFYKK NNERNI