YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279601, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVINQMLKD LEQRSPESNT DATQSGNVAV AHSPIKIALV TGFCVLAVCF LSFYVWQLIS  60
   61 ENNALKAEKI TNKVNAVQMS SAKNRPENIS SQINTSKQIS SNENTVQNDP INVHVTKIYD 120
  121 QQEIAPINGQ IAEPTDVNKV LSNNSAETTA KLITAKPLVN NSASQVTPVK KAKVIADTHS 180
  181 HSGDSSGHSH DIVDIVKAKP KPKVNKMSVS RRQLSADELA EQKLVLAEKA LAAKQIEKAE 240
  241 KLLEDVVIIR PSDSQTRKKL AALWFGRQAY QDAVNLLSQG IALNGKDSSL RQMKARIHLK 300
  301 QGQFTAALNT LKPLAQLKDE QYQVMLANTA QQAKQNKIAV DAYKMLIAMK PDIGRWPLGL 360
  361 AVLYDKNSQF ELASMAYKKA LTKNDLSVSS ENFVKQRLQV IGQ

Type	Start	End	Confidence
Cytoplasmic	1	36	0.83
Transmembrane Helix	37	56	0.91
Non-Cytoplasmic	57	403	0.91