YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145319, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKFIKSKA AIAWGPNQPL SIEEVDVMLP REGEVLVKVV ASGVCHTDAF TLSGDDPEGI  60
   61 FPVILGHEGG GIVEQIGAGV TSVKVGDHVI PLYTPECGEC KFCLSGKTNL CQKIRETQGK 120
  121 GLMPDGTTRF YKDGQPIFHY MGCSTFSEYT VLPEISLAKV NKDAPLEEVC LLGCGVTTGM 180
  181 GAVMNTAKVE EGATVAIFGL GGIGLSAVIG ATMAKASRII AIDINESKFE LAKKLGATDF 240
  241 INPKDYDKPI QDVIVEMTDG GVDYSFECIG NVNLMRSALE CCHKGWGESV VIGVAGAGQE 300
  301 ISTRPFQLVT GRVWRGSAFG GVKGRTELPD YVERYLAGEF KLSDFITHTM PLEDINESFE 360
  361 LMHKGESIRS VIHFDK

Type	Start	End	Confidence
Cytoplasmic	1	168	0.58
Transmembrane Helix	169	184	0.45
Non-Cytoplasmic	185	193	0.68
Transmembrane Helix	194	214	0.66
Cytoplasmic	215	376	0.55