YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145294, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVINFVLL AASLTTGFVA TTQANELDDL LKQVKADRVS EAKLDKKREA EFLSARADKT  60
   61 ALLNKAKKEL SDQNVRNKRL TKEYAANEIT LAQKEVELDN ATGTLGEMFG VSRAAAANAF 120
  121 GQISTSIVSA EFPNRGEALN RIANAKEIPS ISDLEELWFS LQTEMTESGK ISQFSVDVTN 180
  181 LDGTKSTETI TRIGTFNLVS ANGYLTYNDE VSQVQPLPKQ PAGYITDTAS NFSGVTSGYA 240
  241 AVYVDPSRGG ILSLETRKKT LEEFFHEGKE VGYAITVLLI FGVIIALERL IVLGGMSSKI 300
  301 KSQEKNLDKP NENNPLGRLL KVFYDNQSVD AETLELKLDE AILRETPKVD RGINLIKMFA 360
  361 AIAPLMGLLG TVIGMIMTFQ TITLFGTGDP KIMAGNISLA LVTTALGLIC ALPLILIHSV 420
  421 VAGKSKSVLQ KLDEQSAGLI AAIAEKGSK

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	270	0.99
Transmembrane Helix	271	293	0.93
Cytoplasmic	294	357	0.97
Transmembrane Helix	358	379	0.89
Non-Cytoplasmic	380	396	0.80
Transmembrane Helix	397	421	0.87
Cytoplasmic	422	449	0.99