YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279483, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHLYLKSNF FQSVTANKLI LILSCYFVVV FNLTFLLKTY NAVLLLDKYN LLFLLSVPIL  60
   61 LLNILLIFFS VFSVKYLLKP ALIVFTFISA LMTYATFSYG IVFDYGMIEN TVKTSSSEAF 120
  121 TYLNVNAFLI VAALSVLPIM YLYKVKLTFS PLKTELTQRL KLLSLSTLSF FIIAFFFYGD 180
  181 YASVGRNNRT LTSYITPLKS VVSGYKFIRN NYFNEPATFT VLDNSPILLT DNEAGKRVIL 240
  241 MVVGETARAE SFSLNGYDKP TNQFTRVHHP ISFKNMSSCG TATAVSVPCM FSALGRSDYQ 300
  301 KQVANNQQNL LDIVKLANVD VLWLDNNEGC KGACNRVTTI NMDKSKIHNL CDGDYCFDEV 360
  361 LLSPLKNKLS HLTHQTTLIV LHLIGSHGPT YYRRYPENFP KFLPDCQRSD IQNCTQEQIV 420
  421 NTYDNTIAYS DYVLSKMIEE LSLLEEKNNI DTAMLYVSDH GESLGENGLY LHGFPYAFAP 480
  481 TQQTHIPMLF WSNNQNKTDQ NCLNNLADNT FTHDNVFHSI LGLMKVKSKT YKPNFDIFHQ 540
  541 CNTRDLLVNN TTDEQ

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	37	0.94
Non-Cytoplasmic	38	50	0.82
Transmembrane Helix	51	72	0.93
Cytoplasmic	73	80	0.80
Transmembrane Helix	81	103	0.90
Non-Cytoplasmic	104	121	0.92
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	161	0.91
Transmembrane Helix	162	182	0.93
Non-Cytoplasmic	183	555	0.98