YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279414, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.83
Transmembrane Helix	6	24	0.89
Cytoplasmic	25	30	0.83
Transmembrane Helix	31	50	0.92
Non-Cytoplasmic	51	56	0.70
Transmembrane Helix	57	75	0.93
Cytoplasmic	76	86	0.82
Transmembrane Helix	87	109	0.92
Non-Cytoplasmic	110	121	0.87
Transmembrane Helix	122	146	0.86
Cytoplasmic	147	159	0.86
Transmembrane Helix	160	180	0.90
Non-Cytoplasmic	181	187	0.78
Transmembrane Helix	188	209	0.92
Cytoplasmic	210	215	0.79
Transmembrane Helix	216	235	0.89
Non-Cytoplasmic	236	240	0.64
Transmembrane Helix	241	262	0.85
Cytoplasmic	263	468	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFIWIDLLY LVAAVMFITG IKGLTRPKTA VRGNIVAAIG MFIAVVVTLL NSKIVSYELI  60
   61 IAGILLGSLV GAVLAKKMPM TSMPQMVALL NGFGGGASLA IAVASYLVMS VGAEQNNGPL 120
  121 LIASQVAIVL TVLIGGVTLS GSAVALAKLQ EWLPGKSIGF PGIKFFNVLL VISALYMGYG 180
  181 LFESPVSGGY LVLLVAIVLV LGVTLVIPIG GADMPVVIAL LNAYSGIAAA AAGFIMGNTV 240
  241 LIISGALVGA SGLILTQIMC VAMNRSLVNV LFGTIETGSG ETMDADEVYG GKVKSSCPDE 300
  301 VAMVLETASR VVIVPGFGMA MAQAQHAVRD LADTLQSQNI EVEYAIHPVA GRMPGHMNVL 360
  361 LAEAEVDYDL MKTMDEANPT FDQTDVVIVI GANDVTNPMA REDKGSPIYG MPILNVDKAK 420
  421 TVVVVKRSLS AGFAGLPNPL FANDNTLMLF GDGKKAIQDL TAAVNKAA