YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145116, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPSKKNSL TSRIVIGMVA GILLGTFLQW LMPNGSDKVI NLYLFELSLK GLFVDGILEV  60
   61 IGQVFMASLR MLVVPLVFVS LVCGVCSLKD TSKLGRIGGK AVALYLATTA IAISFAIFVA 120
  121 LIIAPGEGVN MVANSSFSGR EAPSLAQVII QMFPTNPFAS FAQGNMLQVI VFALLFGIAI 180
  181 ALSGKAGERV ALLFEDLSEV IMRLVTILMN IAPYGVFALL ATLFTTVSLT TFGNLIEYFL 240
  241 VVFFVLVIHA LVTYPIILKL FTGLNPVIFL KKMRDAAIFA FSTASSNATI PVTLETATKK 300
  301 MGVKNSIASF TVPLGATINM DGTAIMQGVA TVFIAQVFTQ DLTLADYLTV VLTATLASIG 360
  361 TAGVPGVGLI MLAMVLEQVG LPVEGIALII GVDRLLDMTR TAVNVTGDSM VSLVVAKSED 420
  421 QFDHEMYLDP QAGHNIEEID FKHLKDN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.96
Transmembrane Helix	10	32	0.89
Non-Cytoplasmic	33	65	0.93
Transmembrane Helix	66	88	0.87
Cytoplasmic	89	101	0.90
Transmembrane Helix	102	124	0.94
Non-Cytoplasmic	125	163	0.93
Transmembrane Helix	164	184	0.91
Cytoplasmic	185	203	0.88
Transmembrane Helix	204	227	0.86
Non-Cytoplasmic	228	237	0.75
Transmembrane Helix	238	258	0.90
Cytoplasmic	259	309	0.63
Transmembrane Helix	310	338	0.61
Non-Cytoplasmic	339	346	0.46
Transmembrane Helix	347	376	0.76
Cytoplasmic	377	447	0.69