YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144993, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	24	0.93
Cytoplasmic	25	34	0.76
Transmembrane Helix	35	53	0.74
Non-Cytoplasmic	54	68	0.62
Transmembrane Helix	69	92	0.87
Cytoplasmic	93	122	0.98
Transmembrane Helix	123	146	0.86
Non-Cytoplasmic	147	160	0.87
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	189	0.76
Transmembrane Helix	190	211	0.90
Non-Cytoplasmic	212	228	0.89
Transmembrane Helix	229	251	0.88
Cytoplasmic	252	271	0.89
Transmembrane Helix	272	295	0.90
Non-Cytoplasmic	296	314	0.85
Transmembrane Helix	315	337	0.83
Cytoplasmic	338	366	0.90
Transmembrane Helix	367	386	0.96
Non-Cytoplasmic	387	395	0.82
Transmembrane Helix	396	417	0.91
Cytoplasmic	418	423	0.91
Transmembrane Helix	424	445	0.91
Non-Cytoplasmic	446	452	0.85
Transmembrane Helix	453	473	0.92
Cytoplasmic	474	495	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIGTLISLT LYFITMLLIG LYSYRKSTSD VAGYMLGGRS LSPSVAALSA GASDMSGWML  60
   61 MGLPGAMYIT GMSSIWIAIG LVIGAFLNYL VVAPRLRTYT ELANDSITLP DFFENRFNDK 120
  121 SRVLRIVSSV VIVVFFTLYT SSGIVAGGKL FESSFGLNYE IGLYVTAGVV VAYTMFGGFL 180
  181 AVSLTDFVQG CIMFIALVLV PVVAISEVGG LAEMQSSIEM INPDLLNLFS GVSALGIISA 240
  241 MAWGLGYFGQ PHIIVRFMAI RSVKDMPTAR RIGMSWMIVS IIGAMATGFA GIAYVAKTGI 300
  301 KLDDAETIFI VLSQLLFSPL IAGFLLAAIL AAIMSTISSQ LLVTSSSLTG DFYQAFLHKD 360
  361 ASEKQLVLVG RISVLIVALV AIYLAYDRDS SILSLVSNAW AGFGAAFGPV IIGCLYWKDM 420
  421 TRNGALAGII SGAVTVLIWI YAPITIDGQS LSAVMYEIVP GFIVCSLAIY IVSKLSPKVE 480
  481 ESISTTFDEM LEIHK