YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279251, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYETLKFI WWCLIGFLFI GFAITDGMDM GVGGLLPFVA KKDVESRVVI NTVGAHWDGN  60
   61 QVWFITAGAS LFAAWPLVYA TAFSGFYFAM MLTLFSLFLR PLAFDYRSKI DSLKWRTNWD 120
  121 KALFVGSMVP PLVFGVAFGN LLQGVPFGFD SLMRVTYTGS FFALFTPFTL LTGVVSVAMM 180
  181 LLHGSTWLVM RTDADVAQRS ANIGRVVAVV LSLSFALGGV MIWQNIDGYL VVSTIDTMGQ 240
  241 AQPTIKEVTT GSGAWLNNYK ETPLLWLVPA VGVVAPLFVA LLLSIKSKST SVKVFAFIGS 300
  301 SLTIISIILT AGVAMFPFVM PSSSVPNHSL LMWDTVSSEG TLGLMFMVVA FFIPIIIGYT 360
  361 LWCYKKMWRT VTIAEIEQNN HTAY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	28	0.93
Non-Cytoplasmic	29	76	0.85
Transmembrane Helix	77	99	0.86
Cytoplasmic	100	121	0.86
Transmembrane Helix	122	142	0.93
Non-Cytoplasmic	143	160	0.89
Transmembrane Helix	161	184	0.88
Cytoplasmic	185	202	0.86
Transmembrane Helix	203	223	0.95
Non-Cytoplasmic	224	263	0.96
Transmembrane Helix	264	285	0.94
Cytoplasmic	286	293	0.93
Transmembrane Helix	294	319	0.88
Non-Cytoplasmic	320	340	0.94
Transmembrane Helix	341	363	0.94
Cytoplasmic	364	384	0.99