YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279173, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQPISIFIG LRYSRSKSHT GFVSFITFFS TVGILLGVAA LITVVSVMNG FEGELKKRIL  60
   61 GIVPHVIVSD FSTIDTGTDQ EKSWQNLREE LLTQPNVLRV TPFLESEALI QSTKGLQGVL 120
  121 VQGIMPKFEQ KNIVSTHMVA GSMENLSTQS YSLVLGQSLA NKLQVSLGDE VRLVLPNKSV 180
  181 FTPMGRIPVQ RVFTVAGIFH IGSQVDDAMV YVDSRYGAKL LRRTGDGIDK LRLYLDDAFN 240
  241 AKTVVKNLEQ KQQNTEHSKT LDSINFSTWD ESQGALFSAV KMEKNMMWLM LSLIVAVAAF 300
  301 NIVSALVMVV VEKQAEIGIL QTLGLARIEV IKIFITQGMV NGLWGVSLGG LLGVILALNL 360
  361 NSILLVVGVN LFGFGMQDLP IKLEWFDVLT IILSALAMSF LATLYPAYQA STTQPAQVLR 420
  421 NE

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.55
Transmembrane Helix	21	48	0.82
Cytoplasmic	49	286	0.66
Transmembrane Helix	287	310	0.92
Non-Cytoplasmic	311	347	0.63
Transmembrane Helix	348	374	0.83
Cytoplasmic	375	384	0.78
Transmembrane Helix	385	408	0.88
Non-Cytoplasmic	409	422	0.85