YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279164, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVTGTFWL GRYDTVKTRF SSLKKIRWGR YSVISIPSLW LALFFFIPFL VVFKISLAES  60
   61 AIAVPPYTDM FAWNVEDAII DVKIKLGNYL YLFEDSFYLD AYLSSVKIAA VSTFFTLLIG 120
  121 FPMAYFIASK TGTMRTLLLT LVILPFWTSF LLRVYAWMGF LKKNGIVNEF LQGIGLIDQP 180
  181 IQMLQTDFAV YIGIVYTYLP FMILPLYTTL EKLDGSLIEA SKDLGAGPIR TFFLITLPMS 240
  241 MPGILAGCLL VFIPAVGEFV IPALLGASDT LMIGRVLWDE FFQNRDWPMA SAVATMMLLI 300
  301 LVVPIMFLRN GKKEGAE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.96
Transmembrane Helix	31	52	0.87
Non-Cytoplasmic	53	105	0.92
Transmembrane Helix	106	127	0.91
Cytoplasmic	128	135	0.84
Transmembrane Helix	136	157	0.90
Non-Cytoplasmic	158	187	0.96
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	230	0.96
Transmembrane Helix	231	256	0.85
Non-Cytoplasmic	257	286	0.82
Transmembrane Helix	287	308	0.93
Cytoplasmic	309	317	0.81