YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144820, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.54
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	56	0.75
Transmembrane Helix	57	78	0.88
Cytoplasmic	79	87	0.62
Transmembrane Helix	88	108	0.92
Non-Cytoplasmic	109	113	0.65
Transmembrane Helix	114	135	0.93
Cytoplasmic	136	143	0.66
Transmembrane Helix	144	166	0.91
Non-Cytoplasmic	167	186	0.66
Transmembrane Helix	187	207	0.93
Cytoplasmic	208	232	0.64
Transmembrane Helix	233	260	0.82
Non-Cytoplasmic	261	269	0.53
Transmembrane Helix	270	293	0.87
Cytoplasmic	294	302	0.56
Transmembrane Helix	303	322	0.95
Non-Cytoplasmic	323	328	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVSTSLFA LAILVILSAL AAITFGPADI DSSQLMACLV GSCQNQIANI VIWQVRIPRV  60
   61 LVALVAGMGL AIAGAILQNT TRNPLADPYL FGIVSGAGLG ATIANISLAD NLTIALPLAA 120
  121 FLGALFSVII VVFIAKVLQR MEQLLLAGVA VSFMLASITQ FILYFGEPFA TNRVIFWLMG 180
  181 SLARVEMSNF YVIASILLIA MITVFALHRQ IDALLLGDES AASLGVDVDK LRLLMLGICA 240
  241 ALTATIVAYC GGIGFVGLMI PHIVRQLIGV TTLKLIIGSA LIGAIFLIWV DVIARSSLPH 300
  301 AEIPIGIITS ALGSIFFLFI MYRSRATT