YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279032, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.81
Transmembrane Helix	15	35	0.94
Cytoplasmic	36	56	0.77
Transmembrane Helix	57	74	0.70
Non-Cytoplasmic	75	75	0.40
Transmembrane Helix	76	107	0.73
Cytoplasmic	108	138	0.91
Transmembrane Helix	139	159	0.94
Non-Cytoplasmic	160	186	0.83
Transmembrane Helix	187	208	0.90
Cytoplasmic	209	216	0.80
Transmembrane Helix	217	238	0.94
Non-Cytoplasmic	239	247	0.69
Transmembrane Helix	248	267	0.68
Cytoplasmic	268	301	0.62
Transmembrane Helix	302	322	0.85
Non-Cytoplasmic	323	366	0.63
Transmembrane Helix	367	387	0.94
Cytoplasmic	388	404	0.89
Transmembrane Helix	405	425	0.88
Non-Cytoplasmic	426	431	0.73
Transmembrane Helix	432	452	0.91
Cytoplasmic	453	509	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELVNSING VIWSPALIYL CLGTGLFFTI LTRFVQLRHF REMFRLLLSG KSSDQGISSF  60
   61 QALAVSLSGR VGTGNIAGVA AAIGFGGPGA VFWMWIVAFF GAATAYIEST NAQIYKEEED 120
  121 GVYRGGPAYY IEKAMGQKWY AWIFAISTIV ACGVLLPVVQ SNGIGDALVN VFGNGGTVPS 180
  181 FLGDLPLTKV YAATLIVLIL GFIIFGGVKR IANFTQIVVP FMALAYIIIA CVIIALHIDI 240
  241 LPDIFMSIIT DAFTPMAGFG AAIGWGVKRG VYSNEAGQGT GPHAAAAAEV EHPAQQGLVQ 300
  301 AFSVYIDTLF VCSATAFMIL ITKSYNVMPE GSSVFLVQNL AADVVISGPA FTQIAVDSVL 360
  361 TGFGKPFIAI ALFFFAFTTV LAYYFIAENN VSYINRTIKV PALRFVLKLV MMAAVFYGTV 420
  421 AQPSAAWGMG DIGVGLMAWL NIIGIIIIFF MAKPAIKALK DYEAQQKAGV TKFTFDPKSL 480
  481 GIENADFWEE RFAKENPEAN KEANKDNAS