YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278959, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVVVTGIG MLSPLANTAE ETWQNLLLGK SGIGNIDHFD TTDYPTKFAG LVKDFDAQNY  60
   61 MERKEAKKMD LFIQYGIAAG VQAFKDSGLE VTEQNAPRIG VAIGSGIGGL GLIEQNHNKL 120
  121 IKAEGNPRKL SPFFVPSTII NMIAGHLSIM FGLQGPNIAI TTACTSGVHN IGHAARMIAY 180
  181 GDADAVVAGG AEKASTTLGM GGFGAARALS RRNDDPEAAS RPWDKDRDGF VLGDGAGVIV 240
  241 VEEYEHAKAR GAKIYAELVG FGMSGDAYHM TSPPENGDGA ARAMQNAIND AKVDISRIGY 300
  301 INAHGTSTQA GDMAETNAVK TVFGAGAKNV MMGSTKSMTG HLLGAAGAIE AIFSIQALVN 360
  361 KQVPPTINLD NPDEGCDLDY IAGAARDVEL EYVLCNSFGF GGTNGSLIFK KI

Type	Start	End	Confidence
Signal Peptide	1	18	0.92
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	412	0.93