YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_COLP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAVLTSQ EYITHHLSNL KVGEGFWAVH LDSLGWSVFL GLVFLTIFRS VAKKATSGVP  60
   61 GKLQCAVEMV VGFVDDSVKS TFHGKNALIA PLSLTIFVWI LLMNSMDWVP VDLLPHLIHW 120
  121 VTGMPLGDIY MKPVPTADPN ITFGLALGVF ILIIYYSIKV KGVGGFMKEL TTQPFGHWSL 180
  181 YPVNFILETV TMLARPLSLA LRLFGNLYAG ELIFLLIATI GVFQLPVHFL WAAFHLLVIP 240
  241 LQAFIFMMLT IVYLSLAHED H

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.90
Transmembrane Helix	28	48	0.86
Cytoplasmic	49	86	0.89
Transmembrane Helix	87	106	0.86
Non-Cytoplasmic	107	138	0.64
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	203	0.63
Transmembrane Helix	204	225	0.88
Non-Cytoplasmic	226	231	0.66
Transmembrane Helix	232	256	0.87
Cytoplasmic	257	261	0.82