YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278916, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDKFYSLFN HINMLFQELP TFFYITVALI SLAIGSFLNV VIYRTPKMME YTWYHDCREF  60
   61 LADEVANVKA KRLTKITLSK PDSTCPNCDH KIRFYENIPV LSWLLLKGKC SQCTNNISAR 120
  121 YPIIELSTMV LSLIVAQHFG ATISTLWVLL LTWCLITLTM IDFDHMLLPD QITLPLLWLG 180
  181 LLININGTFI PLPDAVIGAA VGYMSLFSVF WLFKVITGKE GMGYGDFKLF AVFGAWIGWQ 240
  241 LLPILILMAS VVGAIVGITL MLFKNHQREQ GIPFGPYLAV AGWITLLWGD GIWSWYLQKI 300
  301 L

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.86
Transmembrane Helix	21	43	0.95
Cytoplasmic	44	133	0.85
Transmembrane Helix	134	161	0.76
Non-Cytoplasmic	162	170	0.59
Transmembrane Helix	171	190	0.77
Cytoplasmic	191	194	0.53
Transmembrane Helix	195	217	0.83
Non-Cytoplasmic	218	238	0.65
Transmembrane Helix	239	263	0.88
Cytoplasmic	264	273	0.66
Transmembrane Helix	274	294	0.89
Non-Cytoplasmic	295	301	0.67