YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144636, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNTLPQKK SHLLDDILLI LTMAVLAGCG LIYEYLLSHY AGRVLGVMES TIYTMIGLMI  60
   61 VSMGLGAFAA RKVRCAFNGF VWLELIIALL GSSAILIIGG LIAITQIFPQ LIADMLSLPP 120
  121 DMKPQGGLFK DLSWLAFNSP YFFGVLLGFF IGMEIPLIAR IRESIHQQHL ANNLGTIYGA 180
  181 DYVGAGIGAA IWVVFLLSLD ISKAAALTAS LNLIAGAFFI LRYWQHLNWR KTFVALHCAL 240
  241 ALIIVLMFSY GNQWLNQMNS LLYLDKVVHT DKTRYQQLTF TERHMGLEQD NIINFYLNGR 300
  301 LQFSSIDEHI YHDYLVAPVM AGSARHDKIL IIGGGDGLAL RDVLKYNPKH VTLIDLDSEL 360
  361 IDIFKQPKKQ VNPRLASQIL QLNKNSLQDE RVTIYRADAF IAINQLLEDR QTFDAIIVDL 420
  421 PDPSHPDLNK LYSVNFYARL KLLLSGDGLI AIQSTSPYHA KDSFIAIGNT LAAAKFSHVE 480
  481 QYHDNVPSFG EWGWTIASKS GASPLTRLNK LTKLPVAHQW LNLAILKAAF IFPNDFYQNK 540
  541 DNIGINILGS HTIYQLHQSA WQDQQGLN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	37	0.93
Non-Cytoplasmic	38	50	0.83
Transmembrane Helix	51	70	0.94
Cytoplasmic	71	79	0.88
Transmembrane Helix	80	105	0.87
Non-Cytoplasmic	106	138	0.87
Transmembrane Helix	139	158	0.90
Cytoplasmic	159	173	0.89
Transmembrane Helix	174	196	0.90
Non-Cytoplasmic	197	203	0.78
Transmembrane Helix	204	224	0.94
Cytoplasmic	225	232	0.89
Transmembrane Helix	233	251	0.98
Non-Cytoplasmic	252	568	0.99