YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLSWNFWG LLPAYLVMSL LMVLPLLIIF YVSFMTSDAY GGYKAIFSLQ SYSQILYTAD  60
   61 WDDNLVLNFQ YLKIIARTLF LSGATAVICL LVSFPVAYYI SRQSNNMKTL LLYLVTLPFW 120
  121 VSMVVRVYAW VLILSNDGVL ESSLRFFGLV GDIDSLLYNN AAMMVGMVYT YIPLMILPIY 180
  181 ASIEKLDTRL IEAASDLYSS RMNTLRRIIL PLCKPGIVAG FILVLVPCLG TVLEPMLLGG 240
  241 GKTMMLGNLI QNQFGVARNW SFGASLTVLL LCIVLFFLMF QAHRASKLRE LS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.84
Transmembrane Helix	11	32	0.93
Non-Cytoplasmic	33	77	0.92
Transmembrane Helix	78	100	0.91
Cytoplasmic	101	109	0.92
Transmembrane Helix	110	130	0.96
Non-Cytoplasmic	131	160	0.86
Transmembrane Helix	161	181	0.89
Cytoplasmic	182	211	0.94
Transmembrane Helix	212	237	0.83
Non-Cytoplasmic	238	259	0.92
Transmembrane Helix	260	280	0.94
Cytoplasmic	281	292	0.90