YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_COLP3
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAAKITVL GAGSYGTALA ICLARNGHKT LLWGRDDNHV AAMEQDRENN KYLADCPFPE  60
   61 NLALEADLEK AVQASDNLLV VVPSHAFADM LKQIKPMLTE NAKIAWATKG LDPQTGDLLQ 120
  121 NVARTVLGDR VSLAVLSGPT FAKEMASGLP TAISLSSEDD EFVAELSDLL HCEKRFRVYS 180
  181 NKDFIGVQLG GAVKNVIAIA AGIADGIGFG ANARTALITR GLAEMTRLGL ALNAEPATFM 240
  241 GMAGLGDLVL TCTDNQSRNR RFGLALGQGK EVEQAITDIG QVVEGYRNTK EVYMLAQRHD 300
  301 VEMPIVEQVY QVLYRGKDAK LAAADLLSRD KKFE

Type	Start	End	Confidence
Signal Peptide	1	24	0.86
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	334	0.96