YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144500, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSPYFKAVW LSIALHVVLL VGLLSGDFSS EPKPLPTPTS QSAEPIKAVV IDKAKFEQAV  60
   61 NKIKRQKINE RDAEKKRLKA VEKRASDAKK RRVQEQARIK KLEKQRKQKE QEKIKADKAA 120
  121 KSSKAKAAKA EKVRKQKEQE KQVAEKAAAA ARSKRIKEEA DAKKAEDLRL KKIADRKRQE 180
  181 IAAKEQAIQD AMLAEQMADE MATRNKARHQ QVMTEVQRYS ALIQQSINQR MITDRSTMAD 240
  241 KSCRLTLTLA PSGFVIDVKV GQGDKVVCDA ANIAIGKAGT LPVSKDPEVF KEMREIAVTV 300
  301 EPKF

Type	Start	End	Confidence
Signal Peptide	1	26	0.90
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	304	0.99