YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ETCD_COLP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	39	0.92
Non-Cytoplasmic	40	43	0.89
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	75	0.84
Transmembrane Helix	76	99	0.84
Non-Cytoplasmic	100	120	0.66
Transmembrane Helix	121	142	0.81
Cytoplasmic	143	152	0.54
Transmembrane Helix	153	168	0.55
Non-Cytoplasmic	169	214	0.75
Transmembrane Helix	215	234	0.75
Cytoplasmic	235	242	0.70
Transmembrane Helix	243	262	0.93
Non-Cytoplasmic	263	268	0.87
Transmembrane Helix	269	290	0.88
Cytoplasmic	291	297	0.80
Transmembrane Helix	298	315	0.88
Non-Cytoplasmic	316	321	0.68
Transmembrane Helix	322	341	0.66
Cytoplasmic	342	353	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFWIASSPH NHNHTKTPNL MRLVIYATLP GVLAQWYFFG WGNLIHIGLA MTTAIICEFT  60
   61 VLSLRKKPIS HELFDGSALL TALLLGICLP ALAPWWITVI GTMFAIVIVK QLYGGLGHNP 120
  121 FNPAMAGYVM LLVSFPLQMT LWQPPLTLVA VDLNFTNTLT TILTGFTVEG YSVEQVRTSI 180
  181 DGITMATPLD TLKTNTGLGL TVLESIKNPI FGENLALGWE WVNAGFLLGG LFLISRKAIA 240
  241 WQTPISFLLS LFICSFIGYS ISPDSSASTM FHWFSGATML GAFFILTDPV TGATSNKGRI 300
  301 IVGLLAGLLV YLIRTSGGYP DGVAFAILLC NMSAPLIDQY TRPRTYGHLK GDK